SE4520045

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3133
  • Cannabis sativa
  • SE4520045
  • Mutator
  • M4
  • scaffold60515:22492-22909
  • TTATTATAA
  • TATTATAAGGTTAATTAAGATTTTTGCCCTCCAAACTTTGACATGTATCAAATCATGCTCTTGAATTTTTTAAGGCAGTTAAAAATTT

Secondary structure and sequence

TSD    TIR
5'



3'
T   T      T      A        -C   CC   C            C    C   C    -         AA   AG          ATAAT              A  T       A          T       GTAAGAAAAG   AATA     TAAAATTTAAAGGACATGATTTAATACGTGTCAAAGTTTAAGGGACATAAT
 TAT ATAAGG TAATTA GATTTTTG  CCT  AAA TTTGACATGTAT AAAT ATG TCTT GAATTTTTT  GGC  TTAAAAATTT     GAATTATTGAGATT TT GATTTAA GATTTTTATC AATTTTA          CCC    TAAAT                                                   
 ||| |||||| |||||| ||||||||  |||  ||| |||||||||||| |||| ||| |||| |||||||||  |||  ||||||||||     |||||||||||||| || ||||||| |||||||||| |||||||          |||    |||||                                                   T
 ATA TATTCC ATTAAT CTAAAAAC  GGA  TTT AAACTGTACATA TTTA TAC AGAA CTTAAAAAA  CCG  AATTTTTAAG     CTTAATAACTTTAA AA CTAAATT CTAAAAATAG TTAAAAT          TGA    TTAAG                                                   
A   T      T      C        TA   -A   A            A    A   A    A         -A   GG          AAGGT              C  C       C          T       -AAATTAAAA   ----     CCACCTAACAGTTACATGATTTAATACGAAGAATCTGAAACTATGGGTGGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End