SE4520049

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3137
  • Cannabis sativa
  • SE4520049
  • Mutator
  • M18
  • scaffold32419:5998-6371
  • AAAAAATAA
  • A

Secondary structure and sequence

TSD    TIR
5'



3' 
 AAAAAAT    GAAAATTACACTACATACCTCTTTTAATTTGATGTCTTTAATTTTTACCCTCTCTTTCAAAATCTATTATGTTTATCTCTTTTTTCAATCATTCTACCAATTTTACTCCTATCATTTCACGATAATTTTTCATTACTCTCTAATCAAAATTTTACCCCAATTTTTCTACAAACCT
        AAGA                                                                                                                                                                               
        ||||                                                                                                                                                                               A
        ACCC                                                                                                                                                                               
AATAAAAA    TCTTCATCTTCTTATGGGTAAAAAAAAAATATGTAATTGGTTTAAATGGGGATTTATTTTAAATTAAGTTTATATATAAAAGAATACTCATAATATGGCTTTAATAGGAGTGTGTGAGTGTATTGATTCTATATTAAAGTTTGTATTATTTAACACAAGAAACATTTATCTACAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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