SE4520052

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3140
  • Cannabis sativa
  • SE4520052
  • Mutator
  • M1
  • scaffold49999:9648-10037
  • CAAGTTTAA
  • GGGTAAATACCATTTTGGAC

Secondary structure and sequence

TSD    TIR
5'



3'
CAAGTTTAA                    GCTTTA    A     A             AT   A              A    A          C   T     T   A     A           TA      G -   -CTTTTT       --TAACCAAC      ACAATTCCTAACACAAACATA    GAAAATGTAAA
         GGGTAAATACCATTTTGGAC      TTTT TAAAA TTGCCAATTGGAT  TTT TTTTGTTAAATGAC AAAT GATCCTGTAT TTC AAAAT GTA AAATA GACTCTGAGCT  ATTTTT A CAA       TTTAATA          TTGAAG                     TACA           
         ||||||||||||||||||||      |||| ||||| |||||||||||||  ||| |||||||||||||| |||| |||||||||| ||| ||||| ||| ||||| |||||||||||  |||||| | |||       |||||||          ||||||                     ||||            
         CCCATTTATGGTAAAACCTG      AAAA GTTTT AATGGTTAACCTG  AAA AAAACAATTTGCTG TTTA CTGGGACATA AAG TTTTA CAT TTTAT CTGAGACTTGA  TAAAAA T GTT       AAATTAT          GATTTC                     CAAT           
AATTTGAAC                    GTACAC    C     C             GT   C              C    C          A   T     C   G     C           -C      G A   TTATTTT       TCTTAGACTA      -------------------CA    ACTGAATTGAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End