SE4520055

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3143
  • Cannabis sativa
  • SE4520055
  • Mutator
  • M19
  • scaffold8391:620-898
  • TTAAATCAT
  • GGGATAAGTTG

Secondary structure and sequence

TSD    TIR
5'



3'
 TTAAATCAT    TA     --AAAA      -    -TTG   --CTA      AAAAATA    CA          TA     -              TG  -   -   GC  AA  T     CACTTTCTACT     C  GC
          GGGA  AGTTG      ATACTT CTTT    TAT     TTAATT       CTCT  TTTTATATTT  TTAAA ATATACCTATTTTT  AG TGG GTT  CA  TA ACCCT           TAAGT TA  
          ||||  |||||      |||||| ||||    |||     ||||||       ||||  ||||||||||  ||||| ||||||||||||||  || ||| |||  ||  || |||||           ||||| ||  A
          TCCT  TTAAT      TATGAG GAAA    ATG     AATTAA       GAGA  AAAATATAGG  AATTT TATATGGGTGAAAA  TC ACT CAG  GT  AT TGGGA           ATTTA AT  
TACTAAATTC    --     GTAATA      T    TAAA   AACAA      --AAATG    TA          --     C              TA  T   A   GA  -A  C     AATCCAATTAC     -  AT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End