SE4520056

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3144
  • Cannabis sativa
  • SE4520056
  • Mutator
  • M13
  • scaffold20398:127772-127972
  • AATAACATT
  • ATTGAGAATTGCTA

Secondary structure and sequence

TSD    TIR
5'



3'
AATAAC      A    C  AAAA      T                  T   -      AT  CT     CGTAATTAAA      -GC  CA  T   TTAAGA
      ATTGAG ATTG TA    GCATTA TGGTGCCTAGCACCTTCT TAG TGTCAT  TG  ATTGG          TAGCGG   TC  TA AAC      
      |||||| |||| ||    |||||| |||||||||||||||||| ||| ||||||  ||  |||||          ||||||   ||  || |||       
      TAACTC TAAC AT    CGTGAT ACCACGGATCGTGGAAGG ATC ACAGTG  AT  TAACC          ATCGCT   AG  AT TTG      
TTACAA      G    A  AACC      C                  T   T      AT  AC     ---------A      ATA  AG  T   TATAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End