SE4530060

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3148
  • Cannabis sativa
  • SE4530060
  • hAT
  • Hat9
  • scaffold77057:5343-5544
  • GTAGCAGA
  • GCAGACAGGGAC

Secondary structure and sequence

TSD    TIR
5'



3' 
GTA  AGA       AGA   AGAAGTTAAGAATAAGGGGGGCCAAAAGATAAAATAAATAATTAAGAGGGGCCAAATACATAATTTTTTGAAAAAATAAAA
   GC   CAGGGAC   GGC                                                                                 
   ||   |||||||   |||                                                                                 T
   CG   GTCCCTG   CCT                                                                                 
AGA  ATG       ---   CGATGAAATCGAGGTTTCCCCCGGTACCGGGGAGGATTTTAAAACCTGTTTTTTTTAAATATTTCGTTAAATTACAATTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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