SE4540062

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3150
  • Cannabis sativa
  • SE4540062
  • CACTA
  • Ca2
  • scaffold39756:13270-13614
  • AGG
  • CACTACAAGAAATGTCAC

Secondary structure and sequence

TSD    TIR
5'



3' 
AGG                  A               TG   --C   C       GGTA    GCTGGCAAAATAGAATTTACCTATGATGTGTTGGCAAAAGGGGGTTGGCAAATCAATGTTGGTATTAGAACTTTTGCCAGCAGAAAATGAAAAGCGCTGGCAAAAAAGACTTT
   CACTACAAGAAATGTCAC TTTGCCAGCACATTT  GTG   TGG AAAAGTT    TTGC                                                                                                                 
   |||||||||||||||||| |||||||||||||||  |||   ||| |||||||    ||||                                                                                                                  
   GTGATGTTCTTTACAGTG AAATGGTCGTGTCAA  GCG   ACG CGACCAT    TTTC                                                                                                                 
GGA                  A               --   ATG   -       ----    ATTGAAAATGGTCGCGTAAAGCGTTTGACGCGACCGTTTCTCTAGTTTCAAAATGGTCGCATGTAAACATCACCGATTTTAGATTGAAAATGGTCGTGTAAATACGCAACCCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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