SE4520067

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3155
  • Cannabis sativa
  • SE4520067
  • Mutator
  • M10
  • scaffold13592:4171-4370
  • TTTTCTAAA
  • AAAGAGAAATGCTAAAGGGCACCACTGGTGCCTAGCACCCTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTTCT      AAA     AA        C              C  -CTAC     AATATC  T      --  -AATTAA    C GGTCCCATATAGTT
      AAAGAG   TGCTA  GGGCACCA TGGTGCCTAGCACC TC     GTGTC      GC ATTGGT  GC       GTAT G              
      ||||||   |||||  |||||||| |||||||||||||| ||     |||||      || ||||||  ||       |||| |               
      TTTCTC   ACGAT  CCCGTGGT ACCACGGATCGTGG AG     CACAG      CG TAACCG  CG       ATAT T              
AAATCT      GTA     AA        C              A  ATTTA     ---GAA  T      AT  CTATGAG    - TTTAATAATATAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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