SE4520071

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3159
  • Cannabis sativa
  • SE4520071
  • Mutator
  • M22
  • scaffold76303:5540-5821
  • TTAACTAAA
  • AAGGGATTTTTACAAGAATATTAAATTTTAGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTAACTA    GA        -AGA     -          CAAAAG     AA       ATCACA        T   A      C     ----------------CT     ------ AAAACAACCGTAAAACAACAAAATAGAACAAT
       AAGG  TTTTTACA    ATATT AAATTTTAGA      TTTAC  TTTTACT      CGGAATTT TTT CAAAAA ACTGT                  TTTTA      T                                
       ||||  ||||||||    ||||| ||||||||||      |||||  |||||||      |||||||| ||| |||||| |||||                  |||||      |                                T
       TTCC  AAAAATGT    TATGA TTTAAAATTT      AAATG  AAAATGA      GTCTTAAA AAA GTTTTT TGACA                  TGTCA      T                                
AAATCAA    AA        GGTG     C          -AAAAA     AA       -CACCC        T   -      A     CATGACACAATTTAAAAA     ACAAAG GCTAACAAATTATCAACAAGGTGACAACAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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