SE4550074

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3162
  • Cannabis sativa
  • SE4550074
  • PIF/harbinger
  • To6
  • scaffold117845:1406-1833
  • TTG
  • GGAACTTGTTTGGCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT   AC          G      CA       G         TTGTGTTTTTAAAAGTGAGAATAAAAAATAATTTTTTGTCATTTTAAAAATTTAAATGTGTTTGGCACAAATTTTTAAAAACTATTTTTAAATATTTTTCTTAGAAAAAAAAATTAATATTTTAACACCATACCATGACATTAATCCATCCGGATTCAAGTTTGGGTATGGTT
  GGA  TTGTTTGGCT TGTTTT  GTTTTCA TTTTTAAAA                                                                                                                                                                             
  |||  |||||||||| ||||||  ||||||| |||||||||                                                                                                                                                                              
  TCT  AACAAACCGA AATGTC  AAATTTT TGACAAAAG                                                                                                                                                                             
GT   AC          -      --       -         ACAAAAAATTTTGACTTTTGTCAAAAATTTTTGATTATTCCCAACAAACCGTTCAAAATTTTTTGATTTTTTGTCTTTTGTAGTTTTACGATAAAAGTTAAAAGTTTTTATTAAAAAAAACAGATTGTATAATATAAAACATAAAACGAGTGTATGAGCCTAGGATCTGGGCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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