Plant MITE

SE4550076

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3164
Cannabis sativa
SE4550076
PIF/harbinger
To3
scaffold14274:30125-30446
TTA
AGGAGGCGTTTGGTTGGGAGGAATGAAA

Secondary structure and sequence

TSD TIR

5'

3'

TT   A             G   -       A   AGGAATAGGAATAAGAATGAGAATATGAATAGGAATGGAATGGAATAAAATTTAAAATGCATAAAAAAAAATTGATAAAAAAATTATTAATTTTTTTTCCTTGTTACATTGGAATGGTCATTCCTTT
  AGG GGCGTTTGGTTGG AGG AATGAAA TAT                                                                                                                               
  ||| ||||||||||||| ||| ||||||| |||                                                                                                                                
  TCC TCGCAAACCAATC TCC TTACTTT TCT                                                                                                                               
AT   A             -   A       A   TATCTTACCTTTACTTTGTTAAAAGTAAGGTAAGAAAACAAACCAACGTAAAATTTCATAACCTTACTGTAAGATTACCTTACGAGAAAGGTGGTAAAACCACCTTACTGATAAGGTAAAAATTTTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4550076

TTAGGAGGCGTTTGGTTGGGAGGAATGAAAATATAGGAATAGGAATAAGAATGAGAATATGAATAGGAATGGAATGGAATAAAATTTAAAATGCATAAAAAAAAATTGATAAAAAAATTATTAATTTTTTTTCCTTGTTACATTGGAATGGTCATTCCTTTCTTTTAAAAATGGAATAGTCATTCCACCAAAATGGTGGAAAGAGCATTCCATTAGAATGTCATTCCAATACTTTAAAATGCAACCAAACAAAAGAATGGAATGAAAATTGTTTCATTTCCATTCTATTCTATTTCATTACCTCTAACCAAACGCTACCTTA

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