SE4520080

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3168
  • Cannabis sativa
  • SE4520080
  • Mutator
  • M18
  • scaffold6263:7701-8075
  • AAAAAAATA
  • GAGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
  AAAAAAATA     AATTACACTACATACTTCTTTTC --     TGCCTTTAAATTTTACCCTCGTATTTAAAATCTATTCTGTTTACTTCTTTTTTCAATCATTCTACCAATTTTACCCTAATCACTTCACGATAAATTTCATTCTTCTCTAATCAAAATTTTGTCCAAACTTTTCTTCAAACTTACACATCCA
           GAGAA                       A  TTTGA                                                                                                                                                       
           |||||                       |  |||||                                                                                                                                                        
           CTCTT                       C  ATGGG                                                                                                                                                       
ATAAAAAAACC     -----------------CAACTT TT     GAAGAAAAATATGTAATTGGTTTAAATGGAAGTTTATTTTAAATTAAGTTTGTATGGAGAAAAATACTCATAACATGGGTTTAATAGGAGTGTGTGAATGTATTGATTCTGTATTAAAGTTTGTATTATTATTTAAACATAAGAAACATCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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