SE4530084

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3172
  • Cannabis sativa
  • SE4530084
  • hAT
  • Hat14
  • scaffold18571:3504-3781
  • ACTACATT
  • TCAGGGCCAGCCCTGAG

Secondary structure and sequence

TSD    TIR
5'



3' 
ACTACAT        A      A --------G   GACGAAGGAGGCGACCACCTTAGGCCCCCCACCGCTCAGGGCCCCCATTTCGAAAAAAAATATAGTTAGTAATAAAATAAATAATAATACTTTTTATACTAAATATG
       TCAGGGCC GCCCTG G         TGA                                                                                                           
       |||||||| |||||| |         |||                                                                                                            
       AGTCCCGG TGGGAT C         CGG                                                                                                           
TTACATC        C      A AATTAAATC   AATCCGTTTTCATTTTTAACCCCGGGTCACTTTTTCACTCCAACAACTCTAAACTTGAGAGTTGGAGAATCAACAATTTAATTAGTTTAATGATGATCCGACGTTGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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