SE4530086

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3174
  • Cannabis sativa
  • SE4530086
  • hAT
  • Hat15
  • scaffold5236:47031-47627
  • GTCCTTTC
  • CTAGGGCTGTAC

Secondary structure and sequence

TSD    TIR
5'



3' 
GTCCTTT      C     ATAAATT   GTAAACCGTCCAACCCGAATAACCCGCCCAAACTAAACCGATATAACCCGATGAAAAATATAAATAGAAAAATCCTACGAAAATATAACCCGCCCAATCTTTATATTGGGCGGGTTGAAGATAATACTAACCCGCCCAAATAACCCAAACTAACCAGACCAATCCTATTAAGATGGTTTTTTTTATATATATATTTATATGTTTTTATTATATATATTTATATATCATATAATTTATTTGACTATTTTAAAAATATAAATTTTAAACTAA
       CTAGGG TGTAC       TTG                                                                                                                                                                                                                                                                              
       |||||| |||||       |||                                                                                                                                                                                                                                                                               
       GATCCC ACATG       GCT                                                                                                                                                                                                                                                                              
CTTTCCT      C     -CAGCCA   AAACCAGCCAAATACGATATAAAATAAGTTGGGTTACATTTCCAGCCCAATGTTTTTAGATTCACGTTGGACGGGTTATTTCTTTTCTTTTTTATCATTGGGCGGGTTACTTTAAACAGACAAACCAGTCCAATTGGGCAGGTTTGGCTGGTGATTATCAAAAAAAAATAAAAATGCTTCTTATTAATATAAAATCAATTAACATTATTACTCTGTTTATATATATATATCTAACTTAAATTATAAGTTTAGTTGGTGGTTTTTTTATAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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