SE4520089

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3177
  • Cannabis sativa
  • SE4520089
  • Mutator
  • M9
  • scaffold1026:146761-147149
  • AATAAAATT
  • ATTGAGTAATTTGCAGCATAAATACCTAAGTTTAACTCCCAGTTGCAAATAAATACCTAAGTTTAATTTTTGGCGGTAATAATACCTAAGTTATATTTTTGGAACTCTTAAATACCTAACTATTAA

Secondary structure and sequence

TSD    TIR
5'



3'
AATAAA              A    A                  C      C                               A                 T          C   --AA     A   A    AATA   T  CATTAT       T  T     T  AA  A  TT   ATT          AA
      ATTGAGTAATTTGC GCAT AATACCTAAGTTTAACTC CAGTTG AAATAAATACCTAAGTTTAATTTTTGGCGGT ATAATACCTAAGTTATA TTTTGGAACT TTA    TACCT ACT TTAA    TTA GT      CCACGTG CA TTTCT AT  GT TA  TTA   AATTTTTGTT  
      |||||||||||||| |||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||    ||||| ||| ||||    ||| ||      ||||||| || ||||| ||  || ||  |||   ||||||||||   
      TAACTCATTAAACG CGTA TTATGGATTCAAATTGAG GTCAAC TTTATTTATGGATTCAAATTAAAAACCGCCA TATTATGGATTCAATAT AAGACTTTGA AAT    ATGGA TGA AATT    AAT CA      GGTGCAC GT AAGGA TA  CA GT  AGT   TTAAAAATAA  
TTAAAA              C    C                  A      A                               C                 T          A   ATCC     C   C    -AAC   T  TTTAAC       C  T     T  AC  G  TC   AAT          AA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End