SE4520100

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3188
  • Cannabis sativa
  • SE4520100
  • Mutator
  • M9
  • scaffold67848:5897-6287
  • TATATTTAA
  • AGAGTAATTTGAGGCATAAATACTTAAGTTTAACTCCCAGTTGTAAATAAATACCTAAGTTTAATTTTTGGCGGAAATAATACCTAAGTTATATTTTTAGAACTCTGTAGGTACCTAACCGTTAAAATATTATGT

Secondary structure and sequence

TSD    TIR
5'



3'
TATATTTA           A                        C                          A          A                  T    A     -C           A  C     AA     T  CATTAT       T  T     T      ATATTTTA     T     TTCAA
        AGAGTAATTTG GGCATAAATACTTAAGTTTAACTC CAGTTGTAAATAAATACCTAAGTTTA TTTTTGGCGG AATAATACCTAAGTTATA TTTT GAACT  TGTAGGTACCT AC GTTAA  TATTA GT      CCACGTG CA TTTCT ATTGGT        ATTAA TTTTT     
        ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||| |||||  ||||||||||| || |||||  ||||| ||      ||||||| || ||||| ||||||        ||||| |||||      
        TCTCATTAAAC CCGTATTTATGGATTCAAATTGAG GTCAACATTTATTTATGGATTCAAAT AAAAACCGCC TTATTATGGATTCAATAT AAGA CTTGA  ACATCCATGGA TG CAATT  ATAAT CA      GGTGCAC GT GAGGA TAACCA        TAATT AAAAA     
AATTTATA           G                        A                          C          A                  T    C     AA           C  A     -A     T  TTTAAC       C  T     T      -GGTTCAG     T     TAAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End