Plant MITE

SE4530101

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3189
Cannabis sativa
SE4530101
hAT
Hat19
scaffold20274:43525-44050
TGCTACGT
ACGTCACTAGCGGACCCA

Secondary structure and sequence

TSD TIR

5'

3'

TGCT    --   --TA         ---      G    ------------        TTAAGCCCATGCTGAAAAGAAAATATTTCTTTTACTTCTTAACTAAAAAAAAAAAATCTTTTAATTATTTTAGTTGCCCACAACAAATACGCAACAAAATGAAAGATCATTGAATGATATTTTGACAGTATATCTCGAAAAGAATGTATTCAATGCTATTGACAACGAGCTTATCATTCATCATTTTCAAAACATAAAAACTCGTCGAGGACAAC
    ACGT  CAC    GCGGACCCA   ATTAAG ACCA            GTGTGGGC                                                                                                                                                                                                                       
    ||||  |||    |||||||||   |||||| ||||            ||||||||                                                                                                                                                                                                                        
    TGCA  GTG    CGCCTGGGT   AAATTA ACCT            TAAAAAAA                                                                                                                                                                                                                       
        TC   TCAC         CTT      -    CCCACCTGCATT        GTATATATTTTTATAAGGTTTTTTTGTTCATTTATATTTCTTTTTGTGTTAAGTTATAAAGTTAAGGGTTGATTTTTCTATAATTTATAATTCGTGATTTTTAGAAGATTATCTTTTTTTTTTTTTCGTTAGATTTTGCTACAAGTTTTATATATTGTATGAATTATAGGATTTTAAAATCGTTTATATAGTTAAAAACTCGAGTATAGAAATCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4530101

TGCTACGTCACTAGCGGACCCAATTAAGGACCAGTGTGGGCTTAAGCCCATGCTGAAAAGAAAATATTTCTTTTACTTCTTAACTAAAAAAAAAAAATCTTTTAATTATTTTAGTTGCCCACAACAAATACGCAACAAAATGAAAGATCATTGAATGATATTTTGACAGTATATCTCGAAAAGAATGTATTCAATGCTATTGACAACGAGCTTATCATTCATCATTTTCAAAACATAAAAACTCGTCGAGGACAACTCTAAAGATATGAGCTCAAAAATTGATATATTTGCTAAAATTTTAGGATATTAAGTATGTTATATATTTTGAACATCGTTTTAGATTGCTTTTTTTTTTTTTCTATTAGAAGATTTTTAGTGCTTAATATTTAATATCTTTTTAGTTGGGAATTGAAATATTGAATTGTGTTTTTCTTTATATTTACTTGTTTTTTTGGAATATTTTTATATATGAAAAAAATTTACGTCCACCCTCCAATTAAATTCTGGGTCCGCCACTGTGCTACGT

Copy Cancel