SE2430004

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3194
  • Coccomyxa subellipsoidea
  • SE2430004
  • hAT
  • Hat2
  • scaffold_3:700459-700854
  • TAAGATAC
  • CAGGGTCACCGCATGCGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAGATAC                  ---       AATAATGCGGGATATAATAGAATGCGTGTATTTTACTGCATTTTATTTTTGGGCATGGAATGCGAGGTCCACAAATACGCCTTTCTTCCCCTTTGGGAGACCAGTGAGGATGGGTCCCACCCAGCAAGGCTATGATTCCCTGCAAACATCTTGAGAATACCCA
        CAGGGTCACCGCATGCGG   GAATGCG                                                                                                                                                                   
        ||||||||||||||||||   |||||||                                                                                                                                                                   A
        GTCTCAGTGGCGTACGCC   ATGGTGT                                                                                                                                                                   
CATAGAAT                  ACT       TTATTTTACGCCATTTTACGTGCGTAATAACCTTTTTTATTTTACTCCCATTTTACGCCATTTTACGCAATCTTTGTCAAAACGGAACCAAAACAGTCCGTTTTAAACCCATGTCGGTCCGTTTTACGACCAAATTGGTCCGTTAAGGTCCTTATCGGGGAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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