SE1130001

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3250
  • Chlorella variabilis
  • SE1130001
  • hAT
  • Hat1
  • scaffold_14:881023-881498
  • CCCATGGG
  • CCCATGGGCAGTGTTTCTG

Secondary structure and sequence

TSD    TIR
5'



3' 
                   AA       ---  AATCGCCAAATGCTGGCGAAATCGGGCCAAAAAACGGCTCTGGCTGGCGATTGGCCGAAGGCCATCGCCAGCCAGGGCTGGCTAAATGAGGGCAGGCGGCGGGGCGACATCGCCAGCGCGTCGCCAGCCCCCATGACTGACATCGCCAATATTTTGAGGAGAAATGGCCAATTTTCCTCAGGAACTTCACTCCATAGTGTTAAACAA
CCCATGGGCAGTGTTTCTG  AGCTGGC   GA                                                                                                                                                                                                               
|||||||||||||||||||  |||||||   ||                                                                                                                                                                                                               G
GGGTACCCGTCACAAAGAC  CGGGAGC   GT                                                                                                                                                                                                               
                   --       ACC  CGAAACCGCTACCCGCCCGCTACTCCTGACGACAGCGCAGGTTTAAAGCGGTTAGTCGACCGCTACCGTGTAACTCCTAACCGCTTTACGCCCCCTCGGTGGGAACGCGGACCGTGTCGCGTCGCCGGTGTACGCCGCGGCGACAACGAAACAGCCGTTAACGGAGGGAAAACCCCCTGACCCCCGCTTCGGGGGTCGTTCGACCGC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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