Plant MITE

SE4620001

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3252
Eucalyptus grandis
SE4620001
Mutator
M1
scaffold_3:54680884-54681414
TAGTTTAAA
AGGGTTAATACCTTGAAAAACCCCAAACTGGTACACTTGTGACGAATTTACCCAAAACTATTTTTTTGACCACCAAAAACCCCAAACTGATATACTTTTGACAAATTTACCCC

Secondary structure and sequence

TSD TIR

5'

3'

TAGTTTAA                        -                             A                  CC            -C  A     TTT               ----    TGGTACACTTGTGACAAATTTACCCTCTATTAGTTTTCATTAAATTTTATTATCAAATTATTAAGTTAAATGACACGTGACAGTTGACGGGTATACCAATTTAGGATTTTACGCTCCGTTTGTCACTGTTTACAATTT
        AGGGTTAATACCTTGAAAAACCCC AAACTGGTACACTTGTGACGAATTTACCC AAACTATTTTTTTGACCA  AAAAACCCCAAA  TG TATAC   TGACAAATTTACCCC    AAAC                                                                                                                                          
        |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||  || |||||   |||||||||||||||    ||||                                                                                                                                           
        TCCCAATTATGGGACTTTTTGGGG TTTGACCATGTGAACACTGTTTAAATGGG TTTGATAAAAAAACTGGT  TTTTTGGGGTTT  AC ATATG   ACTGTTTAAATGGGG    CTGA                                                                                                                                          
AAATTTGA                        G                             G                  AC            AA  -     TAC               CTGA    TATTTTTTAGGATTTGACCATGTAGATACTGTTTAAATGGGTTTTGATTAAATAAACTGATGTTTTTTGGGGTTTTACCATTTAAACACTGTTTATATGGGATACGATTTAACCTAATTATGGTGTTTTTTTAGTGTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4620001

TAGTTTAAAGGGTTAATACCTTGAAAAACCCCAAACTGGTACACTTGTGACGAATTTACCCAAAACTATTTTTTTGACCACCAAAAACCCCAAACTGATATACTTTTGACAAATTTACCCCAAACTGGTACACTTGTGACAAATTTACCCTCTATTAGTTTTCATTAAATTTTATTATCAAATTATTAAGTTAAATGACACGTGACAGTTGACGGGTATACCAATTTAGGATTTTACGCTCCGTTTGTCACTGTTTACAATTTTTGTGATTTTTTTGTGGTATTAATCCAATTTAGCATAGGGTATATTTGTCACAAATTTACCATTTTGGGGTTTTTTGTAGTCAAATAAATTAGTTTTGGGTAAATTTGTCATAGATGTACCAGTTTAGGATTTTTTATAGTCAGTCGGGGTAAATTTGTCACATGTATACAAATTTGGGGTTTTTCATGGTCAAAAAAATAGTTTGGGGTAAATTTGTCACAAGTGTACCAGTTTGGGGGTTTTTCAGGGTATTAACCCTAGTTTAAA

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