SE4650003

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3254
  • Eucalyptus grandis
  • SE4650003
  • PIF/harbinger
  • To1
  • scaffold_8:40706002-40706243
  • TAA
  • AGGCTGCGCATGATAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   C                 CT      T          TTTCTCTGTTTTCCAGAACAGGTTTGGAACAGAAATCCGTTTGGTAACGCAATTTGATTTCTCTATTTCTGAAACAGATT
  AGG TGCGCATGATAAAATTT  GTTTCT GATTTCTCTG                                                                                
  ||| |||||||||||||||||  |||||| ||||||||||                                                                                T
  TCC ACGCGTACTGTTTTAAA  GACTTT GTCTTTAACT                                                                                
AA   C                 --      -          AAAGAGTTAAAGATAAAGTCTTTGACTCTTCAATTTTTAAAATCGAAGACTAAAGAAGAAGTTTAGACAAAGACCTTATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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