Plant MITE

SE4650004

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3255
Eucalyptus grandis
SE4650004
PIF/harbinger
To2
scaffold_5:42247600-42248142
TAA
AGGGCGCGAATGATAACCATTCTA

Secondary structure and sequence

TSD TIR

5'

3'

TA        A   A           -ACG     TTGATTTCTATAAGAGACATAATTTTTTTATTTCTATACTTGGATGTGTTTCTAAACAAAAATACGTGTTTGATAACGATACAAAATTTCTATTTCTGGAATAAAAATTCTTTTGATAATGACACAAAATTTCTCCCTCTTAGGTGGCGGCGGACGGTGGCGACCGGCGGACGATGACGACCGATGGCGAATGGCGGTAGTGGCAGCAAGCGGCAAGCGGCGTTCAGTGAACGGTGG
  AGGGCGCG ATG TAACCATTCTA    AGAAA                                                                                                                                                                                                                                             
  |||||||| ||| |||||||||||    |||||                                                                                                                                                                                                                                              
  TCCCGCGC TAC ATTGGTAAGAT    ACAAG                                                                                                                                                                                                                                             
AA        G   C           AAAG     GTCTTGATAAAAAGATAAGATTTGAACAAAGATCTTATTTTTAAGCAAACCATTTTTATAAAGTAAAAAAAATTAAAAACCTTATCTAAAAATGAGGTCTTTATCCAAATCTTGTATTTAATCTTCATTAAAAAAAAAATGAAGATATAAAGACCTTGTATTTATTCTTTATTTTTAATAAGAGTAATAAGCAGGAACTATAATCAGTCGGCACGTAGGCGATGTTGGCCGGCGGCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4650004

TAAGGGCGCGAATGATAACCATTCTAACGAGAAATTGATTTCTATAAGAGACATAATTTTTTTATTTCTATACTTGGATGTGTTTCTAAACAAAAATACGTGTTTGATAACGATACAAAATTTCTATTTCTGGAATAAAAATTCTTTTGATAATGACACAAAATTTCTCCCTCTTAGGTGGCGGCGGACGGTGGCGACCGGCGGACGATGACGACCGATGGCGAATGGCGGTAGTGGCAGCAAGCGGCAAGCGGCGTTCAGTGAACGGTGGACGGCGGCCGGTTGTAGCGGATGCACGGCTGACTAATATCAAGGACGAATAATGAGAATAATTTTTATTTCTTATTTATGTTCCAGAAATATAGAAGTAAAAAAAAAATTACTTCTAATTTATGTTCTAAACCTATTTCTGGAGTAAAAATCTATTCCAAAAATTAAAAAAAATGAAATATTTTTACCAAACGAATTTTTATTCTAGAAACAAGTTTAGAATAGAAAAATAGTTCTGGAACAGAAATAGAATGGTTACCATGCGCGCCCTAA

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