Plant MITE

SE4650005

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3256
Eucalyptus grandis
SE4650005
PIF/harbinger
To3
scaffold_235:30128-30743
TTA
AGGGTGTGTTTGTTTTGCAAAAAACAATTTTCAGGAAAATGTTTTCC

Secondary structure and sequence

TSD TIR

5'

3'

TT                  A      --   T   -A              ----            TTTCGTTCATTTAGGAAAATGAATCAACGGAAAATGTTTTCCTAGTCAACAGAAAATATTTTCCTTCCAAAGTTTAAATTCAGGAAAACGATTTTCCCTTTAAAAGAATCGGAAAACATTTTCCAAAATGTTTTAAGGTCTTTGCTTAATGAAAAATTTATTATTAAAAAGAATTTCTAATTAAAAATTAAAAATTTGTTATTATTATATATTTTCTTTTCTTTTTTCTTGTTTTCTCTTTTC
  AGGGTGTGTTTGTTTTGC AAAAAC  AAT TTC  GGAAAATGTTTTCC    TCATTTTCAGCG                                                                                                                                                                                                                                                   
  |||||||||||||||||| ||||||  ||| |||  ||||||||||||||    ||||||||||||                                                                                                                                                                                                                                                   T
  TCCCACACAAACAAAGTG TTTTTG  TTG AAG  CCTTTTACAAAAGG    TTGGTAAAAAGT                                                                                                                                                                                                                                                   
AT                  C      CA   C   AA              CCCT            TCTTTTGCCAATCAAAAAGAAACAAATCACTATGTACTGACTTTTATAAAAAATCATAAATCTAACGTAAACTTTTTACTAACTTCCACATCTTCTGTGGCTGTTTCTCCTTCTGCTCCCTCGCTTCGGTTGCCCTCACGTCCTCCCCGATCCCAACCTCCTCCGCTACCACTGCTTTCCCTCCCCCGCTACCTCTTCCTCTCTCCCCTCCTCCTCAATCCCAAATATAAGTGTCCGTTTTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4650005

TTAGGGTGTGTTTGTTTTGCAAAAAACAATTTTCAGGAAAATGTTTTCCTCATTTTCAGCGTTTCGTTCATTTAGGAAAATGAATCAACGGAAAATGTTTTCCTAGTCAACAGAAAATATTTTCCTTCCAAAGTTTAAATTCAGGAAAACGATTTTCCCTTTAAAAGAATCGGAAAACATTTTCCAAAATGTTTTAAGGTCTTTGCTTAATGAAAAATTTATTATTAAAAAGAATTTCTAATTAAAAATTAAAAATTTGTTATTATTATATATTTTCTTTTCTTTTTTCTTGTTTTCTCTTTTCTTTTTTTGCCTGTGAATATAAACCCTAACTCCTCCTCCCCTCTCTCCTTCTCCATCGCCCCCTCCCTTTCGTCACCATCGCCTCCTCCAACCCTAGCCCCTCCTGCACTCCCGTTGGCTTCGCTCCCTCGTCTTCCTCTTTGTCGGTGTCTTCTACACCTTCAATCATTTTTCAAATGCAATCTAAATACTAAAAAATATTTTCAGTCATGTATCACTAAACAAAGAAAAACTAACCGTTTTCTTGAAAAATGGTTTCCCGGAAAACATTTTCCAAGAACGTTACGTTTTTCGTGAAACAAACACACCCTTA

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