Plant MITE

SE4650006

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3257
Eucalyptus grandis
SE4650006
PIF/harbinger
To4
scaffold_8:54574647-54575327
TAA
AGGCCCCGTTTGGTTCGGC

Secondary structure and sequence

TSD TIR

5'

3'

TA   C               ATTTAGA    ---   TTCGGCCTCTAAAGGGGTTTGGGCAAAAGTGAGTGGTGTTTGGTTCAATATTTTGGGGACTTTGGGGAGATGCAATTGCATCTTCAAAGGGCTTGAAGGGACTTTAGAGGAATGGAGGAGGAGAGGTCCATTGGGAAGTTGCTTTCGGAATGCAACTTCTACTGTTCATCTTCACCGGAGAGAAGCCAATCGGAGGACGACGACCGCCGGCCAAGGGGTCGCGCGCGCCGGCAATGCGCCGGCGACCGCCGGCCAAGGGTCCCCCGACCCCAGCGACCGTCGCCGGACCTCAGGCGACGCCTGAG
  AGG CCCGTTTGGTTCGGC       AGGG   GCT                                                                                                                                                                                                                                                                                                                 
  ||| |||||||||||||||       ||||   |||                                                                                                                                                                                                                                                                                                                 G
  TCC GGGCAAACCAAGCCG       CCCC   CGT                                                                                                                                                                                                                                                                                                                 
AA   C               ---AAAA    CTA   AAACGGTTTTACGTTTATGGAAACCCACTTACCCCAAAAGGCTTTACGTTTATAGCAAACCATTTTAAACGTAACTCTACGTTGAAACCGGTTTTACGGCAAACCATTTTAAATGTAAACGTTTCCTGAAAATAATTTAATTTTTTTGTTTTTTTGTAAAAAGAAAATAAAAAAACTTTAGGCCGGTGGCCTGGCGGCCTAGGCCGCCGGCCTGTCGGCCTAGGCCGCCGGCCTGTCGGCCTAGGCTGCCGGTCTGTCGGCCTAGGCCGCGGCCTACCGGCCTAGACCGGCGGACCCAGCGCGCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4650006

TAAGGCCCCGTTTGGTTCGGCATTTAGAAGGGGCTTTCGGCCTCTAAAGGGGTTTGGGCAAAAGTGAGTGGTGTTTGGTTCAATATTTTGGGGACTTTGGGGAGATGCAATTGCATCTTCAAAGGGCTTGAAGGGACTTTAGAGGAATGGAGGAGGAGAGGTCCATTGGGAAGTTGCTTTCGGAATGCAACTTCTACTGTTCATCTTCACCGGAGAGAAGCCAATCGGAGGACGACGACCGCCGGCCAAGGGGTCGCGCGCGCCGGCAATGCGCCGGCGACCGCCGGCCAAGGGTCCCCCGACCCCAGCGACCGTCGCCGGACCTCAGGCGACGCCTGAGGTCGCGCGACCCAGGCGGCCAGATCCGGCCATCCGGCGCCGGATCCGGCTGTCTGGCCGTCGGATCCGGCTGTCCGGCCGCCGGATCCGGCTGTCCGGCCGCCGGATCCGGCGGTCCGGTGGCCGGATTTCAAAAAAATAAAAGAAAAATGTTTTTTTGTTTTTTTAATTTAATAAAAGTCCTTTGCAAATGTAAATTTTACCAAACGGCATTTTGGCCAAAGTTGCATCTCAATGCAAATTTTACCAAACGATATTTGCATTTCGGAAAACCCCATTCACCCAAAGGTATTTGCATTTTGGCAAATGCATCCCCCAAAAGCCGAACCAAACGGGCCCTAA

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