SE4620010

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3261
  • Eucalyptus grandis
  • SE4620010
  • Mutator
  • M2
  • scaffold_5:24725491-24725883
  • TAAATAATA
  • TAGGGATAAGTGCATTGGAAGTCTTAAAATTTGTCATGAAAATGCAATTAAGTCCTAAAACTTTTTAAAATGCAATTAAGTCCTAAAACTTGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAATAA                                                 A               T    -                       -CA     TG   TTAAGTCCTAAAACTTTCAAAAAGTGCAATCAAGTCATAAAACTTATCAAAGTGGTTCAATCTAAGTCATTCCATTGATTGCAT
       TAGGGATAAGTGCATTGGAAGTCTTAAAATTTGTCATGAAAATGCAATT AGTCCTAAAACTTTT AAAA TGCAATTAAGTCCTAAAACTTGT   AAAAG  CAA                                                                                    
       ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||   |||||  |||                                                                                    T
       ATCCCTATTCACGTAATTTTCAGGATTTTGAATAGTACTTTTACGTTAA TCAGGATTTTGAAAG TTTT ACGTTAATTCAGGATTTTGAACA   CTTTC  AAG                                                                                    
ATAATAA                                                 C               T    C                       ATG     --   TTATACAGGATTTTGAAAGTTTTCCAAGTTATTTCAGGATTTTGAACAGAGTTTTCATGTTAGCTCAGGATTTTGAAAAATTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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