SE4650013

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3264
  • Eucalyptus grandis
  • SE4650013
  • PIF/harbinger
  • To6
  • scaffold_3:75725679-75726237
  • TTA
  • AGGCTGCGCATGACAACGCTTC

Secondary structure and sequence

TSD    TIR
5'



3'
TT    T             C   ----------TTG   G -    GA       TTTTTTTTTAGTAGTTATTTTCTATTTCTATTTTGGGGAACAATTTCTGAGTAAAAGAATTCGTTTGGTAACTACACAAAATTTCTACTCTTAGAATAGAAAAAGAATAGAAATGCGTTTGGTAACAAAATAGTTTCTTTTTTGTATTTATTCATTTTTTATTCTTGCTCATGAATCGCCGACCACCAACCGCCGCTCGCCGTCGGCCGGTGGTAGCGGCGACCGGCGGC
  AGGC GCGCATGACAACG TTC             GCT G GGAA  GTTTTTT                                                                                                                                                                                                                                      
  |||| ||||||||||||| |||             ||| | ||||  |||||||                                                                                                                                                                                                                                      C
  TCCG CGCGTACTGTTGT AAG             AAG A AAGA  AAACAAG                                                                                                                                                                                                                                      
AT    T             A   CCAACGAATCTTA   - C    --       GAACCTTGTTTTTTTTTCTTGTTTTTAGGCAAACCATTGCGGTTCAATAAAAAGATAAGGATCCTTATCTTTCAATCGGGCTCTTATCTAAACCTCGTCTTTGTTCTTCGTTTTTTTCAACGAATAACAAGGATCCTTGTTAAAGATCTTTATTCGGTTAAAAAAAAGAAAATAAGGAGAGAGAACGGCACCGGTGGAGGTTGGCGGGCCTCGGTGGCAGCCAGCGGTGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End