SE4620014

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3265
  • Eucalyptus grandis
  • SE4620014
  • Mutator
  • M6
  • scaffold_4:27856759-27857323
  • TTATATATG
  • TATATATGGGGGTAAGTACACTAGAAGTATTAAAAGTTGTGTACGGCATTTACTTTAGTGCCAAAAGTTTTTTTCAGATCACTTAAGTGCTACTTAAAAAAAAAAGATTATTTAAGTGTCAACTCCGGTCCAGATTGC

Secondary structure and sequence

TSD    TIR
5'



3'
T        -                    A              C   A                        T    A     T        -C   -AAA     A        A        ----------C      ---CCA      -C  AAATCCAACGTGGCTACATTTTATTAATTTCTCAATCCTACGTGGCTCAAGCGTACCTAGTCAGCATATAACCCCTAAACGATGTCGTCCAAAAGTTATAAATAGTGATCATTTAAGTGCCAAATTTTATTT
 TATATATG GGGGTAAGTACACTAGAAGT TTAAAAGTTGTGTA GGC TTTACTTTAGTGCCAAAAGTTTTT TCAG TCACT AAGTGCTA  TTA    AAAAA GATTATTT AGTGTCAA           TCCGGT      GATTGC  GG                                                                                                                                    
 |||||||| |||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||| |||| ||||| ||||||||  |||    ||||| |||||||| ||||||||           ||||||      ||||||  ||                                                                                                                                    A
 GTATATAT CCCTATTCATGTGATCTTCA GGTTTTCAACACAT CCG GAATGAAATCACGGTTTTCAAAAA GGTC AGTGA TTCACGAT  AAT    TTTTT CTAATGAA TTACAGTT           AGGCCG      CTAATG  CA                                                                                                                                    
         T                    C              A   C                        C    G     C        TT   CTCC     G        A        ACCACTCTTTA      ATTTAA      CA  GTAAATATTAATTTTAATATTATACTGAACCTTAAAAAAAATTTTTTAGGTTAGGTGTACCGTAAAGGTACACCGTACGAACCGTGACTTCACTAACAGAAAATTGCTGCTGACCGTAACTTCACTATTGAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End