Plant MITE

SE4620015

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3266
Eucalyptus grandis
SE4620015
Mutator
M1
scaffold_6:5865824-5866354
TTAATTTTA
AGGGTTAATACCCTGAAAAATCCCAAACTGGTACACTTGTGACAAATTTACCCCAAACTATTTTTTTAACTATGAAAAACCCCAAACTGGTATACTTGTGACAAATTTAC

Secondary structure and sequence

TSD TIR

5'

3'

TTAATTTT            C                             C                        A                           TTG  A         CCCGACTGACTATAAAAAA   T              A              -    CTAATTTATTTGACTGTAAAAAACCCTAAAATGGTAAATTTGTAACAAATATACCCTATGTTAAATTGGATTAATACCACAAAAAAAATCACAAAAATTGT
        AGGGTTAATACC TGAAAAATCCCAAACTGGTACACTTGTGA AAATTTACCCCAAACTATTTTTTT ACTATGAAAAACCCCAAACTGGTATAC   TG CAAATTTAC                   TCC AAACTGGTACATTT TGACAAATTTACCC CAAA                                                                                                     
        |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||   || |||||||||                   ||| |||||||||||||| |||||||||||||| ||||                                                                                                      
        TCCCAATTATGG ACTTTTTGGGGTTTGACCATGTGAACACT TTTAAATGGGGTTTGATAAAAAAA TGGTACTTTTTGGGGTTTGACCATATG   AC GTTTAAATG                   AGG TTTGACCATGTGAA ACTGTTTAAATGGG GACA                                                                                                     
ATTTTAAT            A                             T                        C                           CAA  G         -------------------   -              C              A    ATCAAAAGCAATTTAAAATGAGAGTTTAATAATTCAATTTACTGTACACCGTCAACTGGCCATATGGTTAAATCCTAAAATGCGAGGCAAACAGTGGCAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4620015

TTAATTTTAGGGTTAATACCCTGAAAAATCCCAAACTGGTACACTTGTGACAAATTTACCCCAAACTATTTTTTTAACTATGAAAAACCCCAAACTGGTATACTTGTGACAAATTTACCCCGACTGACTATAAAAAATCCTAAACTGGTACATTTATGACAAATTTACCCCAAACTAATTTATTTGACTGTAAAAAACCCTAAAATGGTAAATTTGTAACAAATATACCCTATGTTAAATTGGATTAATACCACAAAAAAAATCACAAAAATTGTAAACGGTGACAAACGGAGCGTAAAATCCTAAATTGGTATACCGGTCAACTGCCACATGTCATTTAACTTAATAATTTGAGAGTAAAATTTAACGAAAACTAACAGAGGGTAAATTTGTCACAAGTGTACCAGTTTGGAGTAAATTTGGCAAACGTATACCAGTTTGGGGTTTTTCATGGTCAAAAAAATAGTTTGGGGTAAATTTTTCACAAGTGTACCAGTTTGGGGTTTTTCAAGGTATTAACCCTTAATTTTA

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