SE4620016

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3267
  • Eucalyptus grandis
  • SE4620016
  • Mutator
  • M7
  • scaffold_10:1836301-1836734
  • GCCTATCGT
  • TGGGAAAATTGTCCAAAAAATCATAAATCTATTGTAATTTTGTCAATTCAGTCATAAACCTTTTAACTTTGCCAATTGAGTCATAAACTTTTTCATTTTTTGTTGATTCAGTCCATTCAGCCAATTTTAGCCAGAAAATATTGACGTGGATGCCGGCGGTGCCACGTAGGACTGCCGACGCTAACGTAGACAATTTTTAATAA

Secondary structure and sequence

TSD    TIR
5'



3'
GCCTATCGT                   A  A                              A                 C          A                                   A         A   A                       C                    A         A               AAAAA
         TGGGAAAATTGTCCAAAAA TC TAAATCTATTGTAATTTTGTCAATTCAGTC TAAACCTTTTAACTTTG CAATTGAGTC TAAACTTTTTCATTTTTTGTTGATTCAGTCCATTC GCCAATTTT GCC GAAAATATTGACGTGGATGCCGG GGTGCCACGTAGGACTGCCG CGCTAACGT GACAATTTTTAATAA     
         ||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||      
         GCCCTTTTAACAGGTTTTT AG ATTTGGATAACATTAAAACAGTTAAGTCAG ATTTGGAAAATTGAAAC GTTAACTCAG ATTTGAAAAAGTGAAGAACAGCTAAGTCAGGTAGG CGGTTAAAA CGG CTTTTATGACTGCACCTACGGTC CCACGGTGCATCCTGACGGC GCGATTGTA CTGTTAAAAATTATT     
CTGCTATCC                   C  G                              A                 A          G                                   C         C   C                       A                    C         C               ATAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End