Plant MITE

SE4620019

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3270
Eucalyptus grandis
SE4620019
Mutator
M2
scaffold_2:40022972-40023350
ATTAGAAAA
GGGATAAGTGTTGCAGAAGTTCTAAAACTTGTCACGAAAATGCAATTGAGTCCTAAAACTTGCAAAAAGTGCAATTAAGTCCTAAAATTTGTCAAAATGTTTCAATCGAGTCCTAAAATCGACGCTGTCAAATTTCATAATGGA

Secondary structure and sequence

TSD TIR

5'

3'

ATTAGAAAA                                 A    A            C                                        CA                       ATC  C C           A       AAA    G    GACACGGATGTGGCTTTTTTTAATC
         GGGATAAGTGTTGCAGAAGTTCTAAAACTTGTC CGAA ATGCAATTGAGT CTAAAACTTGCAAAAAGTGCAATTAAGTCCTAAAATTTGT  AAATGTTTCAATCGAGTCCTAAA   GA G TGTCAAATTTC TAATGGA   AGCT ACGT                         
         ||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||   || | ||||||||||| |||||||   |||| ||||                         G
         CCCTATTCACAACGTCTTTAGGATTTTGAACAG GCTT TACGTTAACTCA GATTTTGAATGTTTTTCACGTTAATTCAGGATTTTGAACA  TTTACAAAGTTAGCTCAGGATTT   CT C GCAGTTTAAAG ATTACCT   AAAA AATT                         
AAAAGATTA                                 C    C            A                                        -A                       GAA  A A           A       AAA    -    GATAAGCGGTGCATCCTCTCTCTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4620019

ATTAGAAAAGGGATAAGTGTTGCAGAAGTTCTAAAACTTGTCACGAAAATGCAATTGAGTCCTAAAACTTGCAAAAAGTGCAATTAAGTCCTAAAATTTGTCAAAATGTTTCAATCGAGTCCTAAAATCGACGCTGTCAAATTTCATAATGGAAAAAGCTGACGTGACACGGATGTGGCTTTTTTTAATCGTTTCTCTCTCCTACGTGGCGAATAGTTAAAAAAAAATCCATTAAGAAATTTGACGACATCAAGTTTAGGACTCGATTGAAACATTTAACAAGTTTTAGGACTTAATTGCACTTTTTGTAAGTTTTAGAACTCAATTGCATCTTCGCGACAAGTTTTAGGATTTCTGCAACACTTATCCCATTAGAAAA

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