SE4620022

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3273
  • Eucalyptus grandis
  • SE4620022
  • Mutator
  • M6
  • scaffold_4:22317864-22318420
  • CATATATAA
  • ATATATAAGGGATAAGTACACTAGAAGTGCCAAAAGTTGTTTACGACACTCACTTTAGTGCCAAAAGTTTTCGCCGGCTCACTTAAGTGCTA

Secondary structure and sequence

TSD    TIR
5'



3'
 C      AA   A                GC          T    A A                       CG    C              AATC          C  TC    ----T         ---  - G   AATTC      AACTGATTACGTGTCATTTATAATTAAAATTATAATATGACTTAACAAAATTTTTAAAAAATCCAGTCCACGTGGCATGCTTGGCAATGAAGTGATTGTCTTTTAACAACTGGCATTGAAGTGATCAGTTTA
  ATATAT  GGG TAAGTACACTAGAAGT  CAAAAGTTGT TACG C CTCACTTTAGTGCCAAAAGTTTT  CCGG TCACTTAAGTGCTA    GAAAGAAAAA GA  ACTT     AGTGTCAAC   GG C AGA     TGGCTA                                                                                                                                    
  ||||||  ||| ||||||||||||||||  |||||||||| |||| | |||||||||||||||||||||||  |||| ||||||||||||||    |||||||||| ||  ||||     |||||||||   || | |||     ||||||                                                                                                                                    A
  TATATA  CCC ATTCATGTGATCTTCA  GTTTTCAACA ATGC G GAGTGAAATCACGGTTTTCAAAA  GGCC AGTGAATTCACGAT    TTTTTTTTTT TT  TGAG     TCACAGTTG   CC G TCT     ACGGCC                                                                                                                                    
AA      CC   -                AA          T    C C                       AA    T              GAAA          T  TT    TAAAT         AGG  A G   ----A      TTTAGGCTGTACCGATATAAAATAATTAAAGAGTTAGGATGCACCGAGTGGTCGTATGGATCATTTGTATATAGGGGATTTACTATAGCAGGTTTTCAATATTTATCACTAGTAAACTTACGGTTTAAAATA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End