Plant MITE

SE4620023

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3274
Eucalyptus grandis
SE4620023
Mutator
M10
scaffold_6:38122788-38122984
GTCTATATA
TATATAGA

Secondary structure and sequence

TSD TIR

5'

3'

GTC        ---AAAA  A   -          TTTAATA              CAA     -TTT    --------CAC       -TAAA      A    TA
   TATATAGA       TG TTA TGTGACAGTC       TACTGTGAGAATAA   TCTAT    GGAC           AAAAAAT     TCACAA TAAT  
   ||||||||       || ||| ||||||||||       ||||||||||||||   |||||    ||||           |||||||     |||||| ||||   
   ATGTATCT       AC GAT GCATTGTCAG       ATGACACTCTTATT   AGATA    TCTG           TTTTTTA     GGTGTT GTTA  
           GCCCGAA  -   C          TATTCCC              ATC     TTAT    TATTTAAGAAC       CCCAG      -    AT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4620023

GTCTATATAGAAAAATGATTATGTGACAGTCTTTAATATACTGTGAGAATAACAATCTATTTTGGACCACAAAAAATTAAATCACAAATAATTATAATTGTTGTGGGACCCATTTTTTCAAGAATTTATGTCTTATTATAGACTATTATTCTCACAGTACCCTTATGACTGTTACGCTAGCAAAGCCCGTCTATGTA

Copy Cancel