SE4620026

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3277
  • Eucalyptus grandis
  • SE4620026
  • Mutator
  • M1
  • scaffold_5:8537143-8537672
  • TCATAATTT
  • GGGATAATACCCTAAAAAACCCCAAACTGGTACACCTGTGACAAATTTACCCCAAACTATTTTTTTGACCACCAAAAACCCCAAACTGGTATACTTTTGACAAATTTACCCCAAACTGGTACACTTGTGACAAATTTACCCTATGTTAGTTTTCG

Secondary structure and sequence

TSD    TIR
5'



3'
TCATAATTT   A       CTA                     C                                   CCA                 T    T          --------------------    C           C                   TG       --   -TTAAATTTT     C     AT      AAATAACAC       T  -   AA     C  T  A     -T   GTTCCGTTT    C  TTTAC
         GGG TAATACC   AAAAACCCCAAACTGGTACAC TGTGACAAATTTACCCCAAACTATTTTTTTGACCA   AAAACCCCAAACTGGTA ACTT TGACAAATTT                    ACCC AAACTGGTACA TTGTGACAAATTTACCCTA  TTAGTTT  TCG          ATTCT AAATT  TAAGTT         GTGACAG TA ACC  TATAC AA TT GGATT  TAC         GTCA AG     
         ||| |||||||   ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||   ||||||||||||||||| |||| ||||||||||                    |||| ||||||||||| |||||||||||||||||||  |||||||  |||          ||||| |||||  ||||||         ||||||| || |||  ||||| || || |||||  |||         |||| ||      
         CCC ATTATGG   TTTTTGGGGTTTGACCATGTG ACACTGTTTAAATGGGGTTTGATAAAAAAACTGGT   TTTTGGGGTTTGACCAT TGAA ACTGTTTAAA                    TGGG TTTGACCATGT AATACTGTTTAAATGGGGT  GATTAAA  AGC          TGGGA TTTAA  ATTTAA         CACTGTT AT TGG  ATATG TT AA CCTAA  ATG         TAGT TT     
TTTAATACT   A       AAC                     A                                   ACA                 T    C          TAGGGCTGATTGATATTTTT    A           A                   TT       TA   TGACGTTTTT     -     CC      --------A       T  A   -G     A  T  -     TT   GTGTTTTTT    A  TTTAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End