Plant MITE

SE4650032

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3283
Eucalyptus grandis
SE4650032
PIF/harbinger
To4
scaffold_3:26228669-26229330
AAA
GGCCCCGTTTGGTTCGGC

Secondary structure and sequence

TSD TIR

5'

3'

AAA  C               A      ATG   -- TTTGGCCTCTAAAGGGGTTTGGGCAAAAGCGGGTAGTGTTTTGTTCAATATTTTGGGGACTTTGGGGAGATGCAATTGCATCTCCAAAGGGCTTGAAGGGGCTTTAGGGGAATGGAGGGGGAGAGGTCCATTGGGAAGTTGCATTTTCGGAATGCAACTTCTACTGTTCATCTTCACCGGAGAGAAGTCGATTGGAGGCCGACGACCGCCGGCCAAGGGGTCGCGCACGCTGGCAATGCGCCGGCGACCGCCGGCCAAGGGTCCCCCGACCCCGGCGACCGTCGCCGGACCTCAGGC
   GG CCCGTTTGGTTCGGC TTTAGA   GGC  T                                                                                                                                                                                                                                                                                                         
   || ||||||||||||||| ||||||   |||  |                                                                                                                                                                                                                                                                                                          
   CC GGGCAAACCAAGCCG AAAACC   CCT  C                                                                                                                                                                                                                                                                                                         
AAA  C               -      ---   TA GTAAACGGTTTTACGTTTATGGAAACCGAGTTCCCCCAAAAGGCTTTACGTTTATGGCAAACCATTTTAAACGTAATTTTACGTTGAAACCGGTTTTATGGCAAACCATTTTAAACATAAACATTTACTGAAAATACTTTAATTTTTTTGTTTTTTTTTTAATATAAAAGAAAAAACTTCAGGCCGGTGGCCTGGCGGCCTACCGGCCTAGACCGGCGGACCCAGCGCGCTGGAGTCCGCCGGCGGACCCAGCGCGCTAAGTCCGCTGTCGGCGGACCAAGCGCGCTGGGTCCGCAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4650032

AAAGGCCCCGTTTGGTTCGGCATTTAGAATGGGCTTTTGGCCTCTAAAGGGGTTTGGGCAAAAGCGGGTAGTGTTTTGTTCAATATTTTGGGGACTTTGGGGAGATGCAATTGCATCTCCAAAGGGCTTGAAGGGGCTTTAGGGGAATGGAGGGGGAGAGGTCCATTGGGAAGTTGCATTTTCGGAATGCAACTTCTACTGTTCATCTTCACCGGAGAGAAGTCGATTGGAGGCCGACGACCGCCGGCCAAGGGGTCGCGCACGCTGGCAATGCGCCGGCGACCGCCGGCCAAGGGTCCCCCGACCCCGGCGACCGTCGCCGGACCTCAGGCGACGCCTGGGTCGCGCGAACCAGGCGGCTGTCGCCTGAATCGCGCGACCCAGGCGGCCGCCTGAGGTCGCGCGACCCAGGCGGCCAGATCCGGCCATCCGGCGGTCCGGTGGCCGGACTTCAAAAAAGAAAATATAATTTTTTTTTTGTTTTTTTAATTTCATAAAAGTCATTTACAAATACAAATTTTACCAAACGGTATTTTGGCCAAAGTTGCATTTTAATGCAAATTTTACCAAACGGTATTTGCATTTCGGAAAACCCCCTTGAGCCAAAGGTATTTGCATTTTGGCAAATGCATTCCCCAAAAGCCGAACCAAACGGGCCCAAA

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