Plant MITE

SE4650035

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3286
Eucalyptus grandis
SE4650035
PIF/harbinger
To1
scaffold_4:40281828-40282060
TTA
AGGGTGCGCATGACAAAATTTCT

Secondary structure and sequence

TSD TIR

5'

3'

TT             C         -----------    CA   A   -      GACTAGAAATTGAAAAATTAAAAATTTTAGCTTTTAATTTATTCTTGAAATCTATTTCTAGAATATAA
  AGGGTGCGCATGA AAAATTTCT           GGAA  TAA TTG ATTTTT                                                                    
  ||||||||||||| |||||||||           ||||  ||| ||| ||||||                                                                     
  TCCCGCGCGTACT TTTTAAAGA           AGAG  ACA AAG GATAAG                                                                    
AT             A         TGAAGAGATAA    --   -   A      GGGCCTTATCCAAACTTTGTTTTTAGACAAACCATTACATTAAACTAAAAAGATAAAGACTTTTTTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4650035

TTAGGGTGCGCATGACAAAATTTCTGGAACATAAATTGATTTTTGACTAGAAATTGAAAAATTAAAAATTTTAGCTTTTAATTTATTCTTGAAATCTATTTCTAGAATATAAAATTTTTTCAGAAATAGAAAAATCAAATTACATTACCAAACAGATTTTTGTTTCAAACCTATTCCGGGGAATAGAGAAACAGAGAAATAGAGAAGTAGAAATTTTATCATGCGCGCCCTTA

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