SE4320005

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3296
  • Linum usitatissimum
  • SE4320005
  • Mutator
  • M3
  • scaffold15:1680247-1680794
  • TTATAAATT
  • TTATAAATTGGAAAAATACGTGTTTACATCCTCATATTATGCAAAGTTTACATACGCACCCATGTATAATTTTTTAACCGATTGGACACCCTGTACTTTGACAAACATTTCAAGCAGGCCCCGTTAAGGTCTCTGTCCATTTTTCCGTTATATTGAATGGCGTGGCATGCCAAATAGGCTTTCTTGCATACATGGATAGCTGAATATGTGAGTTGTGTGTTGAATGGAAAATCGTCAGCAGGT

Secondary structure and sequence

TSD    TIR
5'



3'
         ATT                      T         C          TA    -   A      ATT       CG        C   G           A     C   C       -                                      C                                   T     A  A    A T              AA          A   GTT   GCATTGATCTAACGGTTATAGTATAG
   TTATAA   GGAAAAATACGTGTTTACATCC CATATTATG AAAGTTTACA  CGCA CCC TGTATA   TTTTAAC  ATTGGACA CCT TACTTTGACAA CATTT AAG AGGCCCC GTTAAGGTCTCTGTCCATTTTTCCGTTATATTGAATGG GTGGCATGCCAAATAGGCTTTCTTGCATACATGGA AGCTG AT TGTG G TGTGTGTTGAATGG  AATCGTCAGC GGT   GAT                          
   ||||||   |||||||||||||||||||||| ||||||||| ||||||||||  |||| ||| ||||||   |||||||  |||||||| ||| ||||||||||| ||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || |||| | ||||||||||||||  |||||||||| |||   |||                          G
   AATATT   CCTTTTTATGTGTAAATGTGGG GTATAATAC TTTCAAATGT  GCGT GGG ACATAT   AAAATTG  TAGTCTGT GGA ATGAAACTGTT GTAAA TTT TCCGGGG CAGTTCCAGAGGCAGGTAAAAAGGCGATATAACTTACT CACCGTACGGTTTATCCGAAAGAACGTGTGTACCT TTGAC TA ACAC C ACACACAACTTACC  TTAGCAGTCG CCG   TTG                          
TTA      ---                      -         A          AG    A   -      CAT       AG        A   A           C     A   A       A                                      A                                   C     C  C    C T              -G          -   -AT   CCTCATAGCTCCCACTTGATGCTGTG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End