Plant MITE

SE4350006

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3297
Linum usitatissimum
SE4350006
PIF/harbinger
To3
scaffold931:240478-240772
TTA
AGGTAAGGTTTGATATCTAGAATCATATTTCCTA

Secondary structure and sequence

TSD TIR

5'

3'

TT            A             A   C   GAAAAGTTC        T    -   ---   ----     GAGTTAAAAACTTATTGAGAGGATTTGTGTAAGAAAAGTTGAATTAAGAGATTAAGGATTGCGAGGGGAGTTAAAT
  AGGTAAGGTTTG TATCTAGAATCAT TTT CTA         AATTGAGA TAGT GAA   AGG    AAGTT                                                                            
  |||||||||||| ||||||||||||| ||| |||         |||||||| |||| |||   |||    |||||                                                                            T
  TCCATTCCAAAT GTAGATTTTAGTA AAA GAT         TTAACTCT ATCA CTT   TCC    CTCTC                                                                            
AT            C             C   A   ----ACTAC        T    A   AAT   AACC     CAACACTCTCCTTCCAACTTATCTCACTATATTCTCTAAAGCTCACCTTAACACAAAGGTTTGGATTAGTTCACCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4350006

TTAGGTAAGGTTTGATATCTAGAATCATATTTCCTAGAAAAGTTCAATTGAGATTAGTGAAAGGAAGTTGAGTTAAAAACTTATTGAGAGGATTTGTGTAAGAAAAGTTGAATTAAGAGATTAAGGATTGCGAGGGGAGTTAAATTTCCACTTGATTAGGTTTGGAAACACAATTCCACTCGAAATCTCTTATATCACTCTATTCAACCTTCCTCTCACAACCTCTCCCAACCTTAATTCAACTATTCTCAATTCATCATAGAAAACATGATTTTAGATGCTAAACCTTACCTTA

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