SE4350008

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3299
  • Linum usitatissimum
  • SE4350008
  • PIF/harbinger
  • To2
  • scaffold562:96419-96722
  • TTA
  • ATGCTATGTTTGGCAATTGAAATCATGATTCATAGGAAAGTT

Secondary structure and sequence

TSD    TIR
5'



3'
TT                 T AA          A          -GAATTAAAA    AC    TGA        A   T       ----     -     AATGC      C   A  T    AA        --    -----------          CC
  ATGCTATGTTTGGCAAT G  ATCATGATTC TAGGAAAGTT          TAGT  AAAA   TTGAGTTG GGT GGAAGGA    ATGGA GAAAA     TAAATT AAA AA ATGA  GATTCCAA  GGAA           AGTTTATTTT  
  ||||||||||||||||| |  |||||||||| ||||||||||          ||||  ||||   |||||||| ||| |||||||    ||||| |||||     |||||| ||| || ||||  ||||||||  ||||           ||||||||||  C
  TACGATACAAACCGTTA C  TAGTACTAAG ATCCTTTCAA          ATCA  TTTT   AACTTAAC TCA TCTTTTT    TACCT CTTTT     ATTTAA TTT TT TATT  CTAAGGTT  CCTT           TTAGATAAAG  
AT                 T CA          G          ATCAACTCTA    CA    TTC        C   -       ATAA     A     ---GA      -   C  T    -C        AA    AGTACAAAGCG          TA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End