SE4330013

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3304
  • Linum usitatissimum
  • SE4330013
  • hAT
  • Hat2
  • scaffold906:228211-228679
  • CCGGAAGT
  • CCGG

Secondary structure and sequence

TSD    TIR
5'



3' 
        AAGT           TTTTAAATTAA G        --     CCGGACCCGCCCAGTCAAGCCCATTAAAAAACCTATTTGATTCGAATTTCGGACGGGGCCGGGCAAACCCGGAAGTGGTGATTAAACGGGAATGGGTCGGGGCCGGATTTCAGACTATCCAACCCGTCCCCGTCCGGAATTGCAACCCTTCGAATCAAAATCTGCATGCAAGGACACGTGAAAGAGTGGTGATA
    CCGG    TAGGCTTGGCA           A AATCGGGT  TTTAC                                                                                                                                                                                                  
    ||||    |||||||||||           | ||||||||  |||||                                                                                                                                                                                                  A
    GGCC    ATCCGAACCGT           T GCCCGCCC  ACCTC                                                                                                                                                                                                  
TGAA    ----           ----------- -        AT     AGCCTACCAATAAGGGGTTAGGGGCGGGCGTTAATGTTGGCCCAAAATGGGCAGGGGGCAGGCCTCATTCATTACCTATGGCTTAGTGATAGGTAGGGACATAAAAAAGCCCAAACCCATAAAGGCCCAAAATGGGCGGTGTTACTTAAGTAAGTGTAACTTAGTTTTAAACGTACGTTGTGATGGTGAACCGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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