Plant MITE

SE4330015

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3306
Linum usitatissimum
SE4330015
hAT
Hat3
scaffold127:920272-920838
TTTCGGAG
TTCGGAGTAGGCTTGGCAG

Secondary structure and sequence

TSD TIR

5'

3'

T                   ---CAG     T     TCAGATATTCGCTGGAGTCCGTTCGAATTGAGCCGATTTGTGCCCATCAACCGTGGGTTTTTGTCGGTTTCGGGCACACCCGCGACCCATCAAATTCGGGCGACGGGCGGTCATGGTTAATGAGATATCCGACCCATCACCGATCCGATAACAAAACGACGTCGTTTTGTCTATGGTTTATAAACAATTTTTAGGGTTTCAGACTTCAATTTGTGCTTTTCTTTTCGAGTTTATTTCCCAGAGTTCTG
 TTCGGAGTAGGCTTGGCAG      GCCCG GGGTT                                                                                                                                                                                                                                                        
 |||||||||||||||||||      ||||| |||||                                                                                                                                                                                                                                                         
 AGGCTTTATCCGAACCGTT      TCTAT CTCCG                                                                                                                                                                                                                                                        
G                   ACCTAG     G     CCTATGGGGGATAGGTAACGGGCACTTATTACGGGTGCCCAAAATGGGCAGTGGCTGGGTAATTCGAACTACCCATTTTTTAATAATGGTTCGGGTATAACCATACCAAAAGCCCATTTGGGTGTCAACAGCCCATATGGGTTACACTTCATTTTTGAAACTTTAAAGTAAAGAATCTTAAGTCTTTGACTTTACATTTTTCATGGGTTCTTTATACTTAGGTCTCGATTTTTGTAAATGGGTATAAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4330015

TTTCGGAGTAGGCTTGGCAGCAGGCCCGTGGGTTTCAGATATTCGCTGGAGTCCGTTCGAATTGAGCCGATTTGTGCCCATCAACCGTGGGTTTTTGTCGGTTTCGGGCACACCCGCGACCCATCAAATTCGGGCGACGGGCGGTCATGGTTAATGAGATATCCGACCCATCACCGATCCGATAACAAAACGACGTCGTTTTGTCTATGGTTTATAAACAATTTTTAGGGTTTCAGACTTCAATTTGTGCTTTTCTTTTCGAGTTTATTTCCCAGAGTTCTGGAATATGGGTAAATGTTTTTAGCTCTGGATTCATATTTCTTGGGTACTTTTTACATTTCAGTTTCTGAATTCTAAGAAATGAAATTTCAAAGTTTTTACTTCACATTGGGTATACCCGACAACTGTGGGTTTACCCGAAAACCATACCAATATGGGCTTGGTAATAATTTTTTACCCATCAAGCTTAATGGGTCGGTGACGGGTAAAACCCGTGGGCATTATTCACGGGCAATGGATAGGGGGTATCCGCCTCGTATCTGATCCATTGCCAAGCCTATTTCGGAG

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