SE4350017

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3308
  • Linum usitatissimum
  • SE4350017
  • PIF/harbinger
  • To4
  • scaffold257:230395-230699
  • TTA
  • AGGCTAGGTTTGGCAACAAGAATTATAATTCTTAGAAAAATTGAGTTGAGACTAGTGTCAAAAAGTTGATATGGAGTAAGGAGGGGTTGTGGAAGGAAATTTGGATAAAGGGATATAAGGATTTGAAATAG

Secondary structure and sequence

TSD    TIR
5'



3'
TT   C                    AT    C    A   A           C      C   A      TA      AA     G             AT      A              --    A     AATTG     C   ATCAA
  AGG TAGGTTTGGCAACAAGAATT  AATT TTAG AAA TTGAGTTGAGA TAGTGT AAA AGTTGA  TGGAGT  GGAGG GTTGTGGAAGGAA  TTGGAT AAGGGATATAAGGA  TTTG AATAG     TGTTT CCA     
  ||| ||||||||||||||||||||  |||| |||| ||| ||||||||||| |||||| ||| ||||||  ||||||  ||||| |||||||||||||  |||||| ||||||||||||||  |||| |||||     ||||| |||     C
  TCC ATCTAAACCGTTGTTCTTAG  TTAA GATC TTT AACTCAATTCT ATCACA TTT TCAACT  ACTTCA  CCTCC CAACACTTTTCTT  AATTTA TTCCCTATATTTTT  AGAC TTATT     ATAAA GGT     
AT   A                    GT    A    C   C           -      T   A      CA      AC     A             AC      G              TA    A     -CCAA     A   AAACT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End