SE4330021

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3312
  • Linum usitatissimum
  • SE4330021
  • hAT
  • Hat7
  • scaffold377:673426-674073
  • GTGTTCCT
  • T

Secondary structure and sequence

TSD    TIR
5'



3' 
 GTG   C   AACC   CT ------      CGAGAGGCGGTTTCGAGAGATCGTTCCGAGAGATTTTGGACAGTTAGATCAGATTACTTTTGGGTCAACTGTCATCCAATGACGAAAAGTGAGTCAAACGAATTGACTTGTATGGGGTAGTTATGGAAAAAAAAAATGGAAAAAAGTCACATTAGTGTGGTCATTGTACGAGCATGTTATGTCGCTAATACAACCATTTTACGGTCTCGTAATATTGTTGTTACGTCCACCTTACGAGTAGTTGAATTCATCATCGTTATATCCAATTTACAACTCTTTTATGTCGATGATATATACA
    TTC TTC    CGG  A      CGATTC                                                                                                                                                                                                                                                                                                          
    ||| |||    |||  |      ||||||                                                                                                                                                                                                                                                                                                           
    TTG TGG    CTT  T      ACCGAG                                                                                                                                                                                                                                                                                                          
TTCC   -   ----   -- AACGAT      GCTCTCGGTTTAGAAAGTCTACAAAAACTATCGGCTAAGTTATTAATTCTTAATAAAAGCAGTAAAAATTAAATTTCCAACCTTAAAATAGCCCCATACTGTTTTTAAATTTTTATGATAGAGAGAAAATTGAAAAGAAAGAGAAAAAAGAAAGATGAGAAGAATGCATCGCCCTATATTGTTACTGTATTATTATTACATTATTACTACATTGCACTTATATTGTTAAATATATATTTCAGCTGTATTACTCGGATAATTTTTCTGTATTATTATTTGCGTATTGTCTGAGCATTTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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