SE4350027

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3318
  • Linum usitatissimum
  • SE4350027
  • PIF/harbinger
  • To7
  • scaffold86:804792-805181
  • TAA
  • AGATCATCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA         -----        AG  TTTTAGCAATTGCTAAGTGATGTGAAGGATGATGTGACATCCAATTAGCAATTGTTAGGAAAAGAGTGATGTTTCCTAAATTAGCAAGATTGCTAATTTAGAAAGTCAATTAGCAATGCCACATGGGCAAATTGCTACAAGTTTCAAGAAATACATTTATGAATTAAAAA
  AGATCATCT     ACATCATT  TT                                                                                                                                                                          
  |||||||||     ||||||||  ||                                                                                                                                                                          T
  TCTAGTAGA     GATCTTTA  AC                                                                                                                                                                          
AA         GGTAG        --  TAATCGTTAAAGATTAGCCTTAAAATAGCGGTGTAGTCGTTGAAATCAAGGCATTAAAAATTGGAGGAGGTAGGGTCGTTAACTAATGGTTAAAGATTAGTAGTAAAAATGTTTGTTCGTGTTATTTTTACTTGGTTAGTTTTAGTAATATATAATAAATAGAAGTTAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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