Plant MITE

SE4330029

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3320
Linum usitatissimum
SE4330029
hAT
Hat1
scaffold33:1093693-1094334
CTTTCCAA
TAGGCTTGGCAA

Secondary structure and sequence

TSD TIR

5'

3'

CTTTCCAA    C       ----  G  --    TCGG  ----    TC    CATATCCATTACCCATCCACCTTCGTGGCGGCCATTAACCATAACCATCACCATTTCTATTTCGGTGATAGATTTCGTTCTATCCCCATACCCACCCAGTTATGGTTATTACCGCTCCTCCTAACGGTTAACCACCGATATACAAGAAAAAAAAAGGAATGAAAAGTCGAAAATGCATACACATTCATTCATCTGAAAATTTTCCAAATCTAATTCCAAACAATTGTAACAATAGCATTCTAGAACACTAAAAGCACTTGTGACTTGTTCTTG
        TAGG TTGGCAA    CG GG  AGGT    GG    ATGG  ATGG                                                                                                                                                                                                                                                                                 
        |||| |||||||    || ||  ||||    ||    ||||  ||||                                                                                                                                                                                                                                                                                 A
        ATCC AACCGTT    CT GG  AATT    GG    TTGG  GGTA                                                                                                                                                                                                                                                                                 
AACCTTTC    C       AGGA  -  CA    ----  CAAT    CT    TGGGAGTGACTCAAACTGCCAATAATTGGCGCAACTAACCCATAAAACGCCAATACCAATATTGGCAATTGGCGATGCTTACCCATTCTAATCCAATACCCAATGCTTCATTGGCGTTGTAGTGGCATTGGTATGGGTATTGGTAGGGGTTGGGCATTGAATGGTAGATAAATGGGCATGTAATAATTTCGTTATTTCGGATTATGGTAAACCGACAAGATTAGGTGAATGTAAAATTGGGATACAGGGTTGTGTTATGAAAACTAAAATTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4330029

CTTTCCAATAGGCTTGGCAACGGGGAGGTTCGGGGATGGTCATGGCATATCCATTACCCATCCACCTTCGTGGCGGCCATTAACCATAACCATCACCATTTCTATTTCGGTGATAGATTTCGTTCTATCCCCATACCCACCCAGTTATGGTTATTACCGCTCCTCCTAACGGTTAACCACCGATATACAAGAAAAAAAAAGGAATGAAAAGTCGAAAATGCATACACATTCATTCATCTGAAAATTTTCCAAATCTAATTCCAAACAATTGTAACAATAGCATTCTAGAACACTAAAAGCACTTGTGACTTGTTCTTGAAATTAAAATCAAAAGTATTGTGTTGGGACATAGGGTTAAAATGTAAGTGGATTAGAACAGCCAAATGGTATTAGGCTTTATTGCTTTAATAATGTACGGGTAAATAGATGGTAAGTTACGGGTTGGGGATGGTTATGGGTATGGTTACGGTGATGTTGCGGTTACTTCGTAACCCATAACCTAATCTTACCCATTCGTAGCGGTTAACGGTTATAACCATAACCGCAAAATACCCAATCAACGCGGTTAATAACCGTCAAACTCAGTGAGGGTATGGTCGGTTTAACGGTTAAACGGTCAGGATTGCCAACCCTACTTTCCAA

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