SE4330030

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3321
  • Linum usitatissimum
  • SE4330030
  • hAT
  • Hat12
  • scaffold465:432158-432727
  • TACGGAAC
  • CG

Secondary structure and sequence

TSD    TIR
5'



3'
  TA  GAAC   A     ----  TT    ---    -   ATCCAAAAAACCCCCTGAATCCAATCCGGTCAACGAGGACAAAATCTGGTTTGACTGGGTGGCAGATCGGATTCGGATTAATCCGAATCAGAAGGTGACAGGCGACATGTGGGTACCAGATTTACTGGTATCTGATCCGACTCCGCCCGGAAGTATAAATACCTGCAAAAAACCCTAAGATTAGTTTGGTTTATGTCTATGTTTGAGGGATTATTGTTTGGTTTATGTTGCTAGTTGCTACAATGGGTTT
    CG    TAG CTTGG    CA  TTGG   TCCG AAA                                                                                                                                                                                                                                                          
    ||    ||| |||||    ||  ||||   |||| |||                                                                                                                                                                                                                                                           
    GC    ATC GAACC    AC  CCAC   GCCT GGT                                                                                                                                                                                                                                                          
CAAG  --AC   C     TTTA  --    CCA    C   CTAAATATACTTAGGTAATATGTGGGTAACATAAACGTCTAAGCCCCTCAGGAGCGGGCTACTATCGTTAGCCTATATCTAAAGTATAGTAGGGGCCGGTAGCGGCTTAAAACCCAAACCAGCCCCTAAGTTTAATCTAGGCTTTGTAAGATTTGGTTCTAAGTTTTGATCCAAATTTGGTTTCGTTTTAGTTAGTTTGTTGGCAGTTTAATAGGTTTTATGATTTAAAGGAATTGTTAATAGTAATCAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End