SE4350034

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3325
  • Linum usitatissimum
  • SE4350034
  • PIF/harbinger
  • To2
  • scaffold16:866307-866610
  • TAA
  • ATGCTATGTTTGGTAATAGGAATTATGATTTCTAA

Secondary structure and sequence

TSD    TIR
5'



3'
TA                               C   CAAAGAT          T        TA              -A   AAATA  A    -T   AACCT        A         -   ATAA      ---    G     TTATCT
  ATGCTATGTTTGGTAATAGGAATTATGATTT TAA       GAATTAAGAT AGTGTAAA  AGTTGAGTTGGGGT  GAA     TG TGGA  GAA     GGATCAAA GATATAAGG ATT    TTGGAA   TCAT TTTCC      
  ||||||||||||||||||||||||||||||| |||       |||||||||| ||||||||  ||||||||||||||  |||     || ||||  |||     |||||||| ||||||||| |||    ||||||   |||| |||||      A
  TACGATACAAACCGTTATCTTTAGTACTAAA ATT       CTTAATTTTA TCATGTTT  TTAACTCAGCTCCA  CTT     AC ACTT  CTT     TTTAGTTT CTATATTCC TAA    AACTTT   AGTA AAAGG      
AA                               A   CTTACAT          -        TA              AC   CCCTA  -    TT   -ACAT        A         C   --AG      TCA    A     TAACTC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End