SE2710002

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3335
  • Setaria italica
  • SE2710002
  • Tc1/Mariner
  • St1
  • scaffold_5:28634783-28635042
  • TA
  • TACTCCCTCTGGTTTTTTTACATGTCACATTAGGTTTGTCCTAAGTCAAAGTTATCCAACTTTGACCAAATTTATAGAAAAATATAACAACATC

Secondary structure and sequence

TSD    TIR
5'



3' 
           -G                                      G  A  C            A                        CATACTACCAAATATA   TC       ATATA   CA   TG
TACTCCCTCTG  TTTTTTTACATGTCACATTAGGTTTGTCCTAAGTCAAA TT TC AACTTTGACCAA TTTATAGAAAAATATAACAACATC                TGC  TATCAAA     TTC  TGA  
|||||||||||  |||||||||||||||||||||||||||||||||||||| || || |||||||||||| ||||||||||||||||||||||||                |||  |||||||     |||  |||  A
ATGAGGGAGGT  GAAAAAATGTACAGTGTAATCCAAACAGGATTCAGTTT AA AG TTGAAACTGGTT AAATATCTTTTTATATTGTTGTAG                ATG  ATAGTTT     AAG  ATT  
           AA                                      G  C  T            C                        ----------------   TT       AAACA   TG   TA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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