SE2750006

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3339
  • Setaria italica
  • SE2750006
  • PIF/harbinger
  • To2
  • scaffold_5:12725901-12726194
  • TAA
  • AGGTAGTGTTTGGTTCCTCGTATG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               C        --AACC   ACA      AAC        GA  TG    CGACCAAGTGTTTGGTTTGTTGAATCGCACCACTTCATCCAGGATGAGATGGTTCAGATTCTTGGAATATACCGAGAAGATGCCG
  AGGTAGTGTTTGGTT CTCGTATG      GAT   TGTATG   TGGTGCGG  TC  AGCA                                                                                     
  ||||||||||||||| ||||||||      |||   ||||||   ||||||||  ||  ||||                                                                                     T
  TCCATCACAAACCAA GAGCGTAC      CTA   ACATAC   CTACCAAG  TC  CCTA                                                                                     
AA               C        CTTCTA   -GG      --C        --  GA    CCCAACTAGGACCTACCCAACTATGTCCACCCCTACTAAGGTAGGACATGGCTCAGCAAGCCAGCTAAAACCGCGGGTCGAGCCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3