SE2750008

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3341
  • Setaria italica
  • SE2750008
  • PIF/harbinger
  • To3
  • scaffold_9:8392895-8393251
  • TTA
  • AGGGCAAGTACATTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT               CTACACCTCA   GTCTGCCAATCTCATAGGTCGTCACATGCAATGCTACGTAGGATTTTTGCTGATGTGGAGGAGAGAGGGTGATGAGAGAGATAGAGGTCGTTGTTTCGCGAAACAACCGCCTCATAGGCTAGATTTTGGACTACAAGACGACTACTCTAC
  AGGGCAAGTACATTG          GCA                                                                                                                                                      
  |||||||||||||||          |||                                                                                                                                                      C
  TCCCGTTCATGTAAC          AGA                                                                                                                                                      
AT               ----CACAAC   TTATCCGCCAGAGTACGTAACTGTGCATTAGTACTCTGCTGAATTGTTTATTATACAACAGAAAAATTCAACAGAGTATCATTAAGTAAGGGAATTAAACACGTATCTTTTTTTTATAATACTCAACGTACGTTGGTGTTGAGCATGTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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