SE2750010

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3343
  • Setaria italica
  • SE2750010
  • PIF/harbinger
  • To4
  • scaffold_1:36385844-36386217
  • TAA
  • AGGCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA      ---A        GGAGTTTCATAGAGGTTTCATGCACATTAAATACGGTGACACATCAGTATATGTGATGACATGGCATGATAGTTATGAAGTGAGAGAGGAAAGGGGTTTCATCAGGATGAAACTGTGTATACACTGTTTCCAAGACTATGAAACCTATTGAAACTTGCATTGGGGGCT
  AGGCTA    TCCCAGTG                                                                                                                                                                        
  ||||||    ||||||||                                                                                                                                                                        A
  TCCGAT    GTTACGTT                                                                                                                                                                        
AA      CAGG        CCAAAGTAACGTGACAAAAGTTCCTACGGTGTAGTAGGGTACTCCACATAAGAGTACTTACTTTGTCCCTCAGGGTCACGTGTCAAAGTAAAGTGCTAAAGTATCCTACGGGTATTGTAAATTAACACTCCGTACACTAACCTATACCAATCTACTTTACTTTGAGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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